recipe bioconductor-bsgenome.mmusculus.ucsc.mm9

Full genome sequences for Mus musculus (UCSC version mm9)

Homepage:

https://bioconductor.org/packages/3.16/data/annotation/html/BSgenome.Mmusculus.UCSC.mm9.html

License:

Artistic-2.0

Recipe:

/bioconductor-bsgenome.mmusculus.ucsc.mm9/meta.yaml

Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm9, Jul. 2007) and stored in Biostrings objects.

package bioconductor-bsgenome.mmusculus.ucsc.mm9

Versions:

1.4.0-15,  1.4.0-14,  1.4.0-13,  1.4.0-12,  1.4.0-11,  1.4.0-10,  1.4.0-9,  1.4.0-8,  1.4.0-7, 

1.4.0-15,  1.4.0-14,  1.4.0-13,  1.4.0-12,  1.4.0-11,  1.4.0-10,  1.4.0-9,  1.4.0-8,  1.4.0-7,  1.4.0-5,  1.4.0-4,  1.4.0-2,  1.4.0-1,  1.4.0-0

Depends:

• bioconductor-bsgenome >=1.66.0,<1.67.0

• bioconductor-data-packages >=20221102

• curl

• r-base >=4.2,<4.3.0a0

Required By:

• bioconductor-musicatk

• bioconductor-splinter

• bioconductor-bsgenome.mmusculus.ucsc.mm9.masked

• bioconductor-chipcomp

• stream_atac

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-bsgenome.mmusculus.ucsc.mm9

and update with:

conda update bioconductor-bsgenome.mmusculus.ucsc.mm9

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bsgenome.mmusculus.ucsc.mm9:<tag>

(see bioconductor-bsgenome.mmusculus.ucsc.mm9/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm9/README.html)