recipe bioconductor-bsgenome.ptroglodytes.ucsc.pantro3

Full genome sequences for Pan troglodytes (UCSC version panTro3)

Homepage:

https://bioconductor.org/packages/3.18/data/annotation/html/BSgenome.Ptroglodytes.UCSC.panTro3.html

License:

Artistic-2.0

Recipe:

/bioconductor-bsgenome.ptroglodytes.ucsc.pantro3/meta.yaml

Full genome sequences for Pan troglodytes (Chimp) as provided by UCSC (panTro3, Oct. 2010) and stored in Biostrings objects.

package bioconductor-bsgenome.ptroglodytes.ucsc.pantro3

(downloads) docker_bioconductor-bsgenome.ptroglodytes.ucsc.pantro3

versions:
1.4.0-12,  1.4.0-11,  1.4.0-10,  1.4.0-9,  1.4.0-8,  1.4.0-7,  1.4.0-6,  1.4.0-5,  1.4.0-4, 

1.4.0-12,  1.4.0-11,  1.4.0-10,  1.4.0-9,  1.4.0-8,  1.4.0-7,  1.4.0-6,  1.4.0-5,  1.4.0-4,  1.4.0-3,  1.4.0-2,  1.4.0-0

depends bioconductor-bsgenome:

>=1.70.0,<1.71.0

depends bioconductor-data-packages:

>=20231203

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-bsgenome.ptroglodytes.ucsc.pantro3

and update with::

   mamba update bioconductor-bsgenome.ptroglodytes.ucsc.pantro3

To create a new environment, run:

mamba create --name myenvname bioconductor-bsgenome.ptroglodytes.ucsc.pantro3

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-bsgenome.ptroglodytes.ucsc.pantro3:<tag>

(see `bioconductor-bsgenome.ptroglodytes.ucsc.pantro3/tags`_ for valid values for ``<tag>``)

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Render an install-with-bioconda badge with the following MarkDown:

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