recipe bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked

Full masked genome sequences for Rattus norvegicus (UCSC version rn5)

Homepage:

https://bioconductor.org/packages/3.16/data/annotation/html/BSgenome.Rnorvegicus.UCSC.rn5.masked.html

License:

Artistic-2.0

Recipe:

/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked/meta.yaml

Full genome sequences for Rattus norvegicus (Rat) as provided by UCSC (rn5, Mar. 2012) and stored in Biostrings objects. The sequences are the same as in BSgenome.Rnorvegicus.UCSC.rn5, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.

package bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked

(downloads) docker_bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked

Versions:
1.3.99-10,  1.3.99-9,  1.3.99-8,  1.3.99-7,  1.3.99-6,  1.3.99-5,  1.3.99-4,  1.3.99-3,  1.3.99-2, 

1.3.99-10,  1.3.99-9,  1.3.99-8,  1.3.99-7,  1.3.99-6,  1.3.99-5,  1.3.99-4,  1.3.99-3,  1.3.99-2,  1.3.99-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked

and update with:

conda update bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked:<tag>

(see bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked/tags for valid values for <tag>)

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Render an install-with-bioconda badge with the following MarkDown:

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