recipe bioconductor-bsgenome.tguttata.ucsc.taegut1.masked

Full masked genome sequences for Taeniopygia guttata (UCSC version taeGut1)

Homepage:

https://bioconductor.org/packages/3.16/data/annotation/html/BSgenome.Tguttata.UCSC.taeGut1.masked.html

License:

Artistic-2.0

Recipe:

/bioconductor-bsgenome.tguttata.ucsc.taegut1.masked/meta.yaml

Full genome sequences for Taeniopygia guttata (Zebra finch) as provided by UCSC (taeGut1, Jul. 2008) and stored in Biostrings objects. The sequences are the same as in BSgenome.Tguttata.UCSC.taeGut1, except that each of them has the 2 following masks on top: (1) the mask of assembly gaps (AGAPS mask), and (2) the mask of intra-contig ambiguities (AMB mask). Both masks are "active" by default.

package bioconductor-bsgenome.tguttata.ucsc.taegut1.masked

Versions:

1.3.99-10,  1.3.99-9,  1.3.99-8,  1.3.99-7,  1.3.99-6,  1.3.99-5,  1.3.99-4,  1.3.99-3,  1.3.99-2, 

1.3.99-10,  1.3.99-9,  1.3.99-8,  1.3.99-7,  1.3.99-6,  1.3.99-5,  1.3.99-4,  1.3.99-3,  1.3.99-2,  1.3.99-0

Depends:

• bioconductor-bsgenome >=1.66.0,<1.67.0

• bioconductor-bsgenome.tguttata.ucsc.taegut1 >=1.4.0,<1.5.0

• bioconductor-data-packages >=20221102

• curl

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-bsgenome.tguttata.ucsc.taegut1.masked

and update with:

conda update bioconductor-bsgenome.tguttata.ucsc.taegut1.masked

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bsgenome.tguttata.ucsc.taegut1.masked:<tag>

(see bioconductor-bsgenome.tguttata.ucsc.taegut1.masked/tags for valid values for <tag>)

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