recipe bioconductor-bsgenome.vvinifera.urgi.iggp12xv2

Full reference nuclear genome sequences for Vitis vinifera subsp. vinifera PN40024 (IGGP version 12Xv2)

Homepage:

https://bioconductor.org/packages/3.18/data/annotation/html/BSgenome.Vvinifera.URGI.IGGP12Xv2.html

License:

CC0

Recipe:

/bioconductor-bsgenome.vvinifera.urgi.iggp12xv2/meta.yaml

Full reference nuclear genome sequences for Vitis vinifera subsp. vinifera PN40024 (derived from Pinot Noir and close to homozygosity after 6-9 rounds of selfing) as assembled by the IGGP (version 12Xv2) and available at the URGI (INRA)

package bioconductor-bsgenome.vvinifera.urgi.iggp12xv2

(downloads) docker_bioconductor-bsgenome.vvinifera.urgi.iggp12xv2

versions:
0.1-12,  0.1-11,  0.1-10,  0.1-9,  0.1-8,  0.1-7,  0.1-6,  0.1-5,  0.1-4, 

0.1-12,  0.1-11,  0.1-10,  0.1-9,  0.1-8,  0.1-7,  0.1-6,  0.1-5,  0.1-4,  0.1-3,  0.1-2,  0.1-0

depends bioconductor-bsgenome:

>=1.70.0,<1.71.0

depends bioconductor-data-packages:

>=20231203

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-bsgenome.vvinifera.urgi.iggp12xv2

and update with::

   mamba update bioconductor-bsgenome.vvinifera.urgi.iggp12xv2

To create a new environment, run:

mamba create --name myenvname bioconductor-bsgenome.vvinifera.urgi.iggp12xv2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-bsgenome.vvinifera.urgi.iggp12xv2:<tag>

(see `bioconductor-bsgenome.vvinifera.urgi.iggp12xv2/tags`_ for valid values for ``<tag>``)

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