recipe bioconductor-bufferedmatrix

A matrix data storage object held in temporary files

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/BufferedMatrix.html

License:

LGPL (>= 2)

Recipe:

/bioconductor-bufferedmatrix/meta.yaml

Links:

biotools: bufferedmatrix, doi: 10.1038/nmeth.3252

A tabular style data object where most data is stored outside main memory. A buffer is used to speed up access to data.

package bioconductor-bufferedmatrix

(downloads) docker_bioconductor-bufferedmatrix

versions:
1.66.0-1,  1.66.0-0,  1.64.0-0,  1.61.0-1,  1.61.0-0,  1.58.0-2,  1.58.0-1,  1.58.0-0,  1.56.0-0, 

1.66.0-1,  1.66.0-0,  1.64.0-0,  1.61.0-1,  1.61.0-0,  1.58.0-2,  1.58.0-1,  1.58.0-0,  1.56.0-0,  1.54.0-1,  1.54.0-0,  1.52.0-0,  1.50.0-0,  1.48.0-1,  1.48.0-0,  1.46.0-0,  1.44.0-0,  1.42.0-0

depends libblas:

>=3.9.0,<4.0a0

depends libgcc-ng:

>=12

depends liblapack:

>=3.9.0,<4.0a0

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-bufferedmatrix

and update with::

   mamba update bioconductor-bufferedmatrix

To create a new environment, run:

mamba create --name myenvname bioconductor-bufferedmatrix

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-bufferedmatrix:<tag>

(see `bioconductor-bufferedmatrix/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-bufferedmatrix/README.html)