recipe bioconductor-bumphunter

Bump Hunter

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/bumphunter.html

License:

Artistic-2.0

Recipe:

/bioconductor-bumphunter/meta.yaml

Links:

biotools: bumphunter

Tools for finding bumps in genomic data

package bioconductor-bumphunter

Versions:

1.40.0-0,  1.36.0-0,  1.34.0-0,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.24.5-1, 

1.40.0-0,  1.36.0-0,  1.34.0-0,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.24.5-1,  1.24.5-0,  1.22.0-0,  1.20.0-0,  1.16.0-0,  1.12.0-0,  1.10.0-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-dorng

• r-foreach

• r-iterators

• r-locfit

• r-matrixstats

Required By:

• bioconductor-dmrseq

• bioconductor-methylcc

• bioconductor-brainflowprobes

• bioconductor-minfi

• bioconductor-rnaeditr

• bioconductor-genomicstate

• bioconductor-epimutacions

• bioconductor-derfinder

• bioconductor-comethdmr

• bioconductor-damefinder

• bioconductor-champ

• bioconductor-epivizr

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-bumphunter

and update with:

conda update bioconductor-bumphunter

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bumphunter:<tag>

(see bioconductor-bumphunter/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-bumphunter/README.html)