recipe bioconductor-cadd.v1.6.hg19

CADD v1.6 Pathogenicity Scores AnnotationHub Resource Metadata for hg19






Store University of Washington CADD v1.6 hg19 pathogenicity scores AnnotationHub Resource Metadata. Provide provenance and citation information for University of Washington CADD v1.6 hg19 pathogenicity score AnnotationHub resources. Illustrate in a vignette how to access those resources.

package bioconductor-cadd.v1.6.hg19

(downloads) docker_bioconductor-cadd.v1.6.hg19



depends bioconductor-annotationhub:


depends bioconductor-data-packages:


depends bioconductor-genomicscores:


depends curl:

depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-cadd.v1.6.hg19

and update with::

   mamba update bioconductor-cadd.v1.6.hg19

To create a new environment, run:

mamba create --name myenvname bioconductor-cadd.v1.6.hg19

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-cadd.v1.6.hg19/tags`_ for valid values for ``<tag>``)

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