recipe bioconductor-cardinal

A mass spectrometry imaging toolbox for statistical analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/Cardinal.html

License:

Artistic-2.0

Recipe:

/bioconductor-cardinal/meta.yaml

Links:

biotools: cardinal, usegalaxy-eu: cardinal_segmentations

Implements statistical & computational tools for analyzing mass spectrometry imaging datasets, including methods for efficient pre-processing, spatial segmentation, and classification.

package bioconductor-cardinal

Versions:

3.0.1-0,  3.0.0-0,  2.12.0-2,  2.12.0-1,  2.12.0-0,  2.10.0-0,  2.8.0-2,  2.8.0-1,  2.8.0-0, 

3.0.1-0,  3.0.0-0,  2.12.0-2,  2.12.0-1,  2.12.0-0,  2.10.0-0,  2.8.0-2,  2.8.0-1,  2.8.0-0,  2.6.0-0,  2.4.0-0,  2.2.6-0,  2.0.4-0,  2.0.2-0,  1.12.1-1,  1.12.1-0,  1.10.0-0,  1.8.0-0,  1.7.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-ebimage >=4.40.0,<4.41.0

• bioconductor-matter >=2.0.0,<2.1.0

• bioconductor-protgenerics >=1.30.0,<1.31.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-irlba

• r-magrittr

• r-matrix

• r-mclust

• r-nlme

• r-signal

• r-sp

• r-viridislite

Required By:

• bioconductor-cardinalworkflows

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-cardinal

and update with:

conda update bioconductor-cardinal

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cardinal:<tag>

(see bioconductor-cardinal/tags for valid values for <tag>)

Download stats

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