- recipe bioconductor-carnival
A CAusal Reasoning tool for Network Identification (from gene expression data) using Integer VALue programming
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/CARNIVAL.html
- License:
GPL-3
- Recipe:
An upgraded causal reasoning tool from Melas et al in R with updated assignments of TFs' weights from PROGENy scores. Optimization parameters can be freely adjusted and multiple solutions can be obtained and aggregated.
- package bioconductor-carnival¶
-
- Versions:
2.4.0-0
,2.2.0-0
,1.2.0-1
,1.2.0-0
,1.0.0-0
- Depends:
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-carnival
and update with:
conda update bioconductor-carnival
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-carnival:<tag>
(see bioconductor-carnival/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-carnival/README.html)