recipe bioconductor-carnival

A CAusal Reasoning tool for Network Identification (from gene expression data) using Integer VALue programming

Homepage

https://bioconductor.org/packages/3.11/bioc/html/CARNIVAL.html

License

Apache License (== 3.0) | file LICENSE

Recipe

/bioconductor-carnival/meta.yaml

An upgraded causal reasoning tool from Melas et al in R with updated assignments of TFs' weights from PROGENy scores. Optimization parameters can be freely adjusted and multiple solutions can be obtained and aggregated.

package bioconductor-carnival

(downloads) docker_bioconductor-carnival

Versions

1.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-carnival

and update with:

conda update bioconductor-carnival

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-carnival:<tag>

(see bioconductor-carnival/tags for valid values for <tag>)