recipe bioconductor-carnival

A CAusal Reasoning tool for Network Identification (from gene expression data) using Integer VALue programming

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/CARNIVAL.html

License:

GPL-3

Recipe:

/bioconductor-carnival/meta.yaml

An upgraded causal reasoning tool from Melas et al in R with updated assignments of TFs' weights from PROGENy scores. Optimization parameters can be freely adjusted and multiple solutions can be obtained and aggregated.

package bioconductor-carnival

Versions:

2.4.0-0,  2.2.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

Depends:

• r-base >=4.1,<4.2.0a0

• r-dplyr

• r-igraph

• r-lpsolve

• r-readr

• r-rjson

• r-rmarkdown

• r-stringr

Required By:

• bioconductor-cosmosr

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-carnival

and update with:

conda update bioconductor-carnival

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-carnival:<tag>

(see bioconductor-carnival/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-carnival/README.html)