recipe bioconductor-carnival

A CAusal Reasoning tool for Network Identification (from gene expression data) using Integer VALue programming

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/CARNIVAL.html

License:

GPL-3

Recipe:

/bioconductor-carnival/meta.yaml

An upgraded causal reasoning tool from Melas et al in R with updated assignments of TFs' weights from PROGENy scores. Optimization parameters can be freely adjusted and multiple solutions can be obtained and aggregated.

package bioconductor-carnival

(downloads) docker_bioconductor-carnival

Versions:

2.4.0-02.2.0-01.2.0-11.2.0-01.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-carnival

and update with:

conda update bioconductor-carnival

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-carnival:<tag>

(see bioconductor-carnival/tags for valid values for <tag>)

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