recipe bioconductor-casper

Infer alternative splicing from paired-end RNA-seq data. The model is based on counting paths across exons, rather than pairwise exon connections, and estimates the fragment size and start distributions non-parametrically, which improves estimation precision.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/casper.html

License

GPL (>=2)

Recipe

/bioconductor-casper/meta.yaml

Links

biotools: casper

package bioconductor-casper

(downloads) docker_bioconductor-casper

Versions

2.16.0-0, 2.14.0-0, 2.12.0-0, 2.10.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-casper

and update with:

conda update bioconductor-casper

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-casper:<tag>

(see bioconductor-casper/tags for valid values for <tag>)