bioconductor-casper

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Infer alternative splicing from paired-end RNA-seq data. The model is based on counting paths across exons, rather than pairwise exon connections, and estimates the fragment size and start distributions non-parametrically, which improves estimation precision.

Home http://bioconductor.org/packages/3.6/bioc/html/casper.html
Versions 2.10.0, 2.12.0
License GPL (>=2)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-casper

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-casper

and update with:

conda update bioconductor-casper

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-casper.