recipe bioconductor-category

A collection of tools for performing category (gene set enrichment) analysis.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/Category.html

License

Artistic-2.0

Recipe

/bioconductor-category/meta.yaml

Links

biotools: category, doi: 10.1038/nmeth.3252

package bioconductor-category

Versions

2.50.0-1, 2.48.0-0, 2.46.0-0, 2.44.0-0, 2.42.1-0, 2.38.0-1, 2.38.0-0, 2.36.0-0

Depends

• bioconductor-annotate >=1.62.0,<1.63.0

• bioconductor-annotationdbi >=1.46.0,<1.47.0

• bioconductor-biobase >=2.44.0,<2.45.0

• bioconductor-biocgenerics >=0.30.0,<0.31.0

• bioconductor-genefilter >=1.66.0,<1.67.0

• bioconductor-graph >=1.62.0,<1.63.0

• bioconductor-gseabase >=1.46.0,<1.47.0

• bioconductor-rbgl >=1.60.0,<1.61.0

• r-base >=3.6,<3.7.0a0

• r-dbi

• r-matrix

Required By

• bioconductor-cellhts2

• bioconductor-sctensor

• bioconductor-meshr

• bioconductor-ppistats

• bioconductor-gostats

• bioconductor-pcpheno

• bioconductor-phenotest

• bioconductor-eisa

• bioconductor-rdavidwebservice

• bioconductor-interactivedisplay

• bioconductor-gcmap

• bioconductor-reportingtools

• bioconductor-categorycompare

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-category

and update with:

conda update bioconductor-category

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-category:<tag>

(see bioconductor-category/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-category/README.html)