recipe bioconductor-ccdata

Data for Combination Connectivity Mapping (ccmap) Package

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/ccdata.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-ccdata/meta.yaml

This package contains microarray gene expression data generated from the Connectivity Map build 02 and LINCS l1000. The data are used by the ccmap package to find drugs and drug combinations to mimic or reverse a gene expression signature.

package bioconductor-ccdata

Versions:

1.24.0-0,  1.23.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0, 

1.24.0-0,  1.23.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0

Depends:

• bioconductor-data-packages >=20221107

• curl

• r-base >=4.2,<4.3.0a0

Required By:

• bioconductor-ccmap

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-ccdata

and update with:

conda update bioconductor-ccdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ccdata:<tag>

(see bioconductor-ccdata/tags for valid values for <tag>)

Download stats

Link to this page

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