recipe bioconductor-cctutorial

Data package for ChIP-chip tutorial






This is a data package that accompanies a ChIP-chip tutorial, which has been published in PLoS Computational Biology. The data and source code in this package allow the reader to completely reproduce the steps in the tutorial.

package bioconductor-cctutorial

(downloads) docker_bioconductor-cctutorial



depends bioconductor-affy:


depends bioconductor-biobase:


depends bioconductor-data-packages:


depends bioconductor-ringo:


depends bioconductor-topgo:


depends curl:

depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-cctutorial

and update with::

   mamba update bioconductor-cctutorial

To create a new environment, run:

mamba create --name myenvname bioconductor-cctutorial

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-cctutorial/tags`_ for valid values for ``<tag>``)

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