recipe bioconductor-celarefdata

Processed scRNA data for celaref Vignette - cell labelling by reference






This experiment data contains some processed data used in the celaref package vignette. These are publically available datasets, that have been processed by celaref package, and can be manipulated further with it.

package bioconductor-celarefdata

(downloads) docker_bioconductor-celarefdata



depends bioconductor-data-packages:


depends curl:

depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-celarefdata

and update with::

   mamba update bioconductor-celarefdata

To create a new environment, run:

mamba create --name myenvname bioconductor-celarefdata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-celarefdata/tags`_ for valid values for ``<tag>``)

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