recipe bioconductor-cellarepertorium

Data structures, clustering and testing for single cell immune receptor repertoires (scRNAseq RepSeq/AIRR-seq)

Homepage

https://bioconductor.org/packages/3.13/bioc/html/CellaRepertorium.html

License

GPL-3

Recipe

/bioconductor-cellarepertorium/meta.yaml

Methods to cluster and analyze high-throughput single cell immune cell repertoires, especially from the 10X Genomics VDJ solution. Contains an R interface to CD-HIT (Li and Godzik 2006). Methods to visualize and analyze paired heavy-light chain data. Tests for specific expansion, as well as omnibus oligoclonality under hypergeometric models.

package bioconductor-cellarepertorium

(downloads) docker_bioconductor-cellarepertorium

Versions

1.2.0-01.0.0-21.0.0-1

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cellarepertorium

and update with:

conda update bioconductor-cellarepertorium

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cellarepertorium:<tag>

(see bioconductor-cellarepertorium/tags for valid values for <tag>)