recipe bioconductor-cellity

A support vector machine approach to identifying and filtering low quality cells from single-cell RNA-seq datasets.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/cellity.html

License

GPL (>= 2)

Recipe

/bioconductor-cellity/meta.yaml

package bioconductor-cellity

(downloads) docker_bioconductor-cellity

Versions

1.10.0-0

Depends bioconductor-annotationdbi

>=1.44.0,<1.45.0

Depends bioconductor-org.hs.eg.db

>=3.7.0,<3.8.0

Depends bioconductor-org.mm.eg.db

>=3.7.0,<3.8.0

Depends bioconductor-topgo

>=2.34.0,<2.35.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-e1071

Depends r-ggplot2

Depends r-mvoutlier

Depends r-robustbase

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cellity

and update with:

conda update bioconductor-cellity

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cellity:<tag>

(see bioconductor-cellity/tags for valid values for <tag>)