recipe bioconductor-cellity

Quality Control for Single-Cell RNA-seq Data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/cellity.html

License:

GPL (>= 2)

Recipe:

/bioconductor-cellity/meta.yaml

A support vector machine approach to identifying and filtering low quality cells from single-cell RNA-seq datasets.

package bioconductor-cellity

Versions:

1.26.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-org.hs.eg.db >=3.16.0,<3.17.0

• bioconductor-org.mm.eg.db >=3.16.0,<3.17.0

• bioconductor-topgo >=2.50.0,<2.51.0

• r-base >=4.2,<4.3.0a0

• r-e1071

• r-ggplot2

• r-mvoutlier

• r-robustbase

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-cellity

and update with:

conda update bioconductor-cellity

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cellity:<tag>

(see bioconductor-cellity/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cellity/README.html)