bioconductor-cellmapper

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Infers cell type-specific expression based on co-expression similarity with known cell type marker genes. Can make accurate predictions using publicly available expression data, even when a cell type has not been isolated before.

Home http://bioconductor.org/packages/3.6/bioc/html/CellMapper.html
Versions 1.2.0, 1.4.0
License Artistic-2.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-cellmapper

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cellmapper

and update with:

conda update bioconductor-cellmapper

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-cellmapper.