recipe bioconductor-cellmapperdata

Pre-processed data for use with the CellMapper package






Experiment data package. Contains microarray data from several large expression compendia that have been pre-processed for use with the CellMapper package. This pre-processed data is recommended for routine searches using the CellMapper package.

package bioconductor-cellmapperdata

(downloads) docker_bioconductor-cellmapperdata



depends bioconductor-cellmapper:


depends bioconductor-data-packages:


depends bioconductor-experimenthub:


depends curl:

depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-cellmapperdata

and update with::

   mamba update bioconductor-cellmapperdata

To create a new environment, run:

mamba create --name myenvname bioconductor-cellmapperdata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-cellmapperdata/tags`_ for valid values for ``<tag>``)

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