recipe bioconductor-cghregions

Dimension Reduction for Array CGH Data with Minimal Information Loss.

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/CGHregions.html

License:

GPL (http://www.gnu.org/copyleft/gpl.html)

Recipe:

/bioconductor-cghregions/meta.yaml

Links:

biotools: cghregions, doi: 10.1002/9783527678679.dg00687

Dimension Reduction for Array CGH Data with Minimal Information Loss

package bioconductor-cghregions

(downloads) docker_bioconductor-cghregions

versions:
1.60.0-0,  1.58.0-0,  1.56.0-0,  1.52.0-0,  1.50.0-0,  1.48.0-1,  1.48.0-0,  1.46.0-0,  1.44.0-0, 

1.60.0-0,  1.58.0-0,  1.56.0-0,  1.52.0-0,  1.50.0-0,  1.48.0-1,  1.48.0-0,  1.46.0-0,  1.44.0-0,  1.42.0-1,  1.40.0-0,  1.38.0-0,  1.36.0-0,  1.34.0-0

depends bioconductor-biobase:

>=2.62.0,<2.63.0

depends bioconductor-cghbase:

>=1.62.0,<1.63.0

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-cghregions

and update with::

   mamba update bioconductor-cghregions

To create a new environment, run:

mamba create --name myenvname bioconductor-cghregions

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-cghregions:<tag>

(see `bioconductor-cghregions/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cghregions/README.html)