recipe bioconductor-champ

Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC

Homepage

https://bioconductor.org/packages/3.10/bioc/html/ChAMP.html

License

GPL-3

Recipe

/bioconductor-champ/meta.yaml

The package includes quality control metrics, a selection of normalization methods and novel methods to identify differentially methylated regions and to highlight copy number alterations.

package bioconductor-champ

(downloads) docker_bioconductor-champ

Versions

2.16.0-1, 2.14.0-1, 2.12.2-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-champ

and update with:

conda update bioconductor-champ

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-champ:<tag>

(see bioconductor-champ/tags for valid values for <tag>)