recipe bioconductor-chimphumanbraindata

Chimp and human brain data package

Homepage:

https://bioconductor.org/packages/3.20/data/experiment/html/ChimpHumanBrainData.html

License:

MIT

Recipe:

/bioconductor-chimphumanbraindata/meta.yaml

This data package contains chimp and human brain data extracted from the ArrayExpress accession E-AFMX-2. Both human and chimp RNAs were run on human hgu95av2 Affymetrix arrays. It is a useful dataset for tutorials.

package bioconductor-chimphumanbraindata

(downloads) docker_bioconductor-chimphumanbraindata

versions:
1.44.0-0,  1.38.0-0,  1.36.0-0,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.28.0-0,  1.26.0-0, 

1.44.0-0,  1.38.0-0,  1.36.0-0,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.28.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.20.0-0

depends bioconductor-affy:

>=1.84.0,<1.85.0

depends bioconductor-data-packages:

>=20241103

depends bioconductor-limma:

>=3.62.0,<3.63.0

depends bioconductor-qvalue:

>=2.38.0,<2.39.0

depends curl:

depends r-base:

>=4.4,<4.5.0a0

depends r-hexbin:

depends r-statmod:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-chimphumanbraindata

and update with::

   mamba update bioconductor-chimphumanbraindata

To create a new environment, run:

mamba create --name myenvname bioconductor-chimphumanbraindata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-chimphumanbraindata:<tag>

(see `bioconductor-chimphumanbraindata/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-chimphumanbraindata/README.html)