recipe bioconductor-chipexoqualexample

Example data for the ChIPexoQual package, which implements a quality control pipeline for ChIP-exo data

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/ChIPexoQualExample.html

License:

GPL (>= 2)

Recipe:

/bioconductor-chipexoqualexample/meta.yaml

Data for the ChIPexoQual package, consisting of (3) chromosome 1 aligned reads from a ChIP-exo experiment for FoxA1 in mouse liver cell lines aligned to the mm9 genome.

package bioconductor-chipexoqualexample

(downloads) docker_bioconductor-chipexoqualexample

versions:
1.26.0-0,  1.24.0-0,  1.21.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.13.0-0, 

1.26.0-0,  1.24.0-0,  1.21.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.13.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0

depends bioconductor-data-packages:

>=20231203

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-chipexoqualexample

and update with::

   mamba update bioconductor-chipexoqualexample

To create a new environment, run:

mamba create --name myenvname bioconductor-chipexoqualexample

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-chipexoqualexample:<tag>

(see `bioconductor-chipexoqualexample/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-chipexoqualexample/README.html)