recipe bioconductor-chipseq

chipseq: A package for analyzing chipseq data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/chipseq.html

License:

Artistic-2.0

Recipe:

/bioconductor-chipseq/meta.yaml

Links:

biotools: chipseq, doi: 10.1038/nmeth.3252

Tools for helping process short read data for chipseq experiments

package bioconductor-chipseq

Versions:

1.48.0-1,  1.48.0-0,  1.44.0-2,  1.44.0-1,  1.44.0-0,  1.42.0-0,  1.40.0-1,  1.40.0-0,  1.38.0-0, 

1.48.0-1,  1.48.0-0,  1.44.0-2,  1.44.0-1,  1.44.0-0,  1.42.0-0,  1.40.0-1,  1.40.0-0,  1.38.0-0,  1.36.0-0,  1.34.0-1,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-0,  1.26.1-0,  1.24.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-shortread >=1.56.0,<1.57.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• r-base >=4.2,<4.3.0a0

• r-lattice

Required By:

• bioconductor-copywriter

• bioconductor-transcriptr

• bioconductor-htseqgenie

• bioconductor-chipqc

• bioconductor-soggi

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-chipseq

and update with:

conda update bioconductor-chipseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chipseq:<tag>

(see bioconductor-chipseq/tags for valid values for <tag>)

Download stats

Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-chipseq/README.html)