recipe bioconductor-chipseq

chipseq: A package for analyzing chipseq data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/chipseq.html

License

Artistic-2.0

Recipe

/bioconductor-chipseq/meta.yaml

Links

biotools: chipseq, doi: 10.1038/nmeth.3252

Tools for helping process short read data for chipseq experiments

package bioconductor-chipseq

Versions

1.38.0-0,  1.36.0-0,  1.34.0-1,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-0,  1.26.1-0,  1.24.0-0

Depends

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-shortread >=1.46.0,<1.47.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.3.0

• liblapack >=3.8.0,<3.9.0a0

• r-base >=4.0,<4.1.0a0

• r-lattice

Required By

• bioconductor-chipqc

• bioconductor-copywriter

• bioconductor-soggi

• bioconductor-transcriptr

• bioconductor-htseqgenie

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chipseq

and update with:

conda update bioconductor-chipseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chipseq:<tag>

(see bioconductor-chipseq/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-chipseq/README.html)