recipe bioconductor-chipseq

Tools for helping process short read data for chipseq experiments

Homepage

https://bioconductor.org/packages/3.9/bioc/html/chipseq.html

License

Artistic-2.0

Recipe

/bioconductor-chipseq/meta.yaml

Links

biotools: chipseq, doi: 10.1038/nmeth.3252

package bioconductor-chipseq

Versions

1.34.0-1, 1.32.0-1, 1.32.0-0, 1.30.0-0, 1.28.0-0, 1.26.1-0, 1.24.0-0

Depends

• bioconductor-biocgenerics >=0.30.0,<0.31.0

• bioconductor-genomicranges >=1.36.0,<1.37.0

• bioconductor-iranges >=2.18.0,<2.19.0

• bioconductor-s4vectors >=0.22.0,<0.23.0

• bioconductor-shortread >=1.42.0,<1.43.0

• libgcc-ng >=7.3.0

• r-base >=3.6,<3.7.0a0

• r-lattice

Required By

• bioconductor-soggi

• bioconductor-chipqc

• bioconductor-ping

• bioconductor-htseqgenie

• bioconductor-copywriter

• bioconductor-transcriptr

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chipseq

and update with:

conda update bioconductor-chipseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chipseq:<tag>

(see bioconductor-chipseq/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-chipseq/README.html)