recipe bioconductor-chipseqr

Identifying Protein Binding Sites in High-Throughput Sequencing Data

Homepage

https://bioconductor.org/packages/3.13/bioc/html/ChIPseqR.html

License

GPL (>= 2)

Recipe

/bioconductor-chipseqr/meta.yaml

ChIPseqR identifies protein binding sites from ChIP-seq and nucleosome positioning experiments. The model used to describe binding events was developed to locate nucleosomes but should flexible enough to handle other types of experiments as well.

package bioconductor-chipseqr

Versions

1.46.0-0,  1.44.0-1,  1.44.0-0,  1.42.0-0,  1.40.0-0,  1.38.0-1,  1.36.0-1,  1.36.0-0

Depends

• bioconductor-biocgenerics >=0.38.0,<0.39.0

• bioconductor-biostrings >=2.60.0,<2.61.0

• bioconductor-genomicranges >=1.44.0,<1.45.0

• bioconductor-hilbertvis >=1.50.0,<1.51.0

• bioconductor-iranges >=2.26.0,<2.27.0

• bioconductor-s4vectors >=0.30.0,<0.31.0

• bioconductor-shortread >=1.50.0,<1.51.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=9.3.0

• liblapack >=3.8.0,<4.0a0

• r-base >=4.1,<4.2.0a0

• r-fbasics

• r-timsac

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chipseqr

and update with:

conda update bioconductor-chipseqr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chipseqr:<tag>

(see bioconductor-chipseqr/tags for valid values for <tag>)

Link to this page

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