- recipe bioconductor-chipseqr
Identifying Protein Binding Sites in High-Throughput Sequencing Data
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/ChIPseqR.html
- License:
GPL (>= 2)
- Recipe:
ChIPseqR identifies protein binding sites from ChIP-seq and nucleosome positioning experiments. The model used to describe binding events was developed to locate nucleosomes but should flexible enough to handle other types of experiments as well.
- package bioconductor-chipseqr¶
-
- Versions:
1.48.0-1
,1.48.0-0
,1.46.0-0
,1.44.0-1
,1.44.0-0
,1.42.0-0
,1.40.0-0
,1.38.0-1
,1.36.0-1
,1.48.0-1
,1.48.0-0
,1.46.0-0
,1.44.0-1
,1.44.0-0
,1.42.0-0
,1.40.0-0
,1.38.0-1
,1.36.0-1
,1.36.0-0
- Depends:
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-hilbertvis
>=1.52.0,<1.53.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-shortread
>=1.52.0,<1.53.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-chipseqr
and update with:
conda update bioconductor-chipseqr
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-chipseqr:<tag>
(see bioconductor-chipseqr/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-chipseqr/README.html)