bioconductor-chipxpress

downloads

ChIPXpress takes as input predicted TF bound genes from ChIPx data and uses a corresponding database of gene expression profiles downloaded from NCBI GEO to rank the TF bound targets in order of which gene is most likely to be functional TF target.

Home http://bioconductor.org/packages/3.7/bioc/html/ChIPXpress.html
Versions 1.24.0, 1.22.0
License GPL(>=2)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-chipxpress
Links biotools: chipxpress, doi: 10.1186/1471-2105-14-188

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chipxpress

and update with:

conda update bioconductor-chipxpress

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-chipxpress.