- recipe bioconductor-chipxpress
ChIPXpress: enhanced transcription factor target gene identification from ChIP-seq and ChIP-chip data using publicly available gene expression profiles
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/ChIPXpress.html
- License:
GPL(>=2)
- Recipe:
- Links:
biotools: chipxpress, doi: 10.1186/1471-2105-14-188
ChIPXpress takes as input predicted TF bound genes from ChIPx data and uses a corresponding database of gene expression profiles downloaded from NCBI GEO to rank the TF bound targets in order of which gene is most likely to be functional TF target.
- package bioconductor-chipxpress¶
-
- Versions:
1.42.0-0
,1.38.0-0
,1.36.0-0
,1.34.0-0
,1.30.0-1
,1.28.0-1
,1.26.0-0
,1.24.0-0
,1.22.0-0
- Depends:
bioconductor-affy
>=1.76.0,<1.77.0
bioconductor-biobase
>=2.58.0,<2.59.0
bioconductor-chipxpressdata
>=1.36.0,<1.37.0
bioconductor-frma
>=1.50.0,<1.51.0
bioconductor-geoquery
>=2.66.0,<2.67.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-chipxpress
and update with:
conda update bioconductor-chipxpress
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-chipxpress:<tag>
(see bioconductor-chipxpress/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-chipxpress/README.html)