- recipe bioconductor-chipxpress
ChIPXpress: enhanced transcription factor target gene identification from ChIP-seq and ChIP-chip data using publicly available gene expression profiles
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/ChIPXpress.html
- License
GPL(>=2)
- Recipe
- Links
biotools: chipxpress, doi: 10.1186/1471-2105-14-188
ChIPXpress takes as input predicted TF bound genes from ChIPx data and uses a corresponding database of gene expression profiles downloaded from NCBI GEO to rank the TF bound targets in order of which gene is most likely to be functional TF target.
- package bioconductor-chipxpress¶
-
- Versions
1.38.0-0
,1.36.0-0
,1.34.0-0
,1.30.0-1
,1.28.0-1
,1.26.0-0
,1.24.0-0
,1.22.0-0
- Depends
bioconductor-affy
>=1.72.0,<1.73.0
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-chipxpressdata
>=1.32.0,<1.33.0
bioconductor-frma
>=1.46.0,<1.47.0
bioconductor-geoquery
>=2.62.0,<2.63.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-chipxpress
and update with:
conda update bioconductor-chipxpress
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-chipxpress:<tag>
(see bioconductor-chipxpress/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-chipxpress/README.html)