recipe bioconductor-chipxpress

ChIPXpress takes as input predicted TF bound genes from ChIPx data and uses a corresponding database of gene expression profiles downloaded from NCBI GEO to rank the TF bound targets in order of which gene is most likely to be functional TF target.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/ChIPXpress.html

License

GPL(>=2)

Recipe

/bioconductor-chipxpress/meta.yaml

Links

biotools: chipxpress, doi: 10.1186/1471-2105-14-188

package bioconductor-chipxpress

Versions

1.28.0-1, 1.26.0-0, 1.24.0-0, 1.22.0-0

Depends

• bioconductor-affy >=1.62.0,<1.63.0

• bioconductor-biobase >=2.44.0,<2.45.0

• bioconductor-chipxpressdata >=1.22.0,<1.23.0

• bioconductor-frma >=1.36.0,<1.37.0

• bioconductor-geoquery >=2.52.0,<2.53.0

• r-base >=3.6,<3.7.0a0

• r-biganalytics

• r-bigmemory

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chipxpress

and update with:

conda update bioconductor-chipxpress

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chipxpress:<tag>

(see bioconductor-chipxpress/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-chipxpress/README.html)