recipe bioconductor-chromscape

Analysis of single-cell epigenomics datasets with a Shiny App

Homepage

https://bioconductor.org/packages/3.14/bioc/html/ChromSCape.html

License

GPL-3

Recipe

/bioconductor-chromscape/meta.yaml

ChromSCape - Chromatin landscape profiling for Single Cells - is a ready-to-launch user-friendly Shiny Application for the analysis of single-cell epigenomics datasets (scChIP-seq, scATAC-seq, scCUT&Tag, …) from aligned data to differential analysis & gene set enrichment analysis. It is highly interactive, enables users to save their analysis and covers a wide range of analytical steps: QC, preprocessing, filtering, batch correction, dimensionality reduction, vizualisation, clustering, differential analysis and gene set analysis.

package bioconductor-chromscape

(downloads) docker_bioconductor-chromscape

Versions

1.4.0-01.2.0-01.0.0-21.0.0-1

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chromscape

and update with:

conda update bioconductor-chromscape

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chromscape:<tag>

(see bioconductor-chromscape/tags for valid values for <tag>)

Download stats