recipe bioconductor-chromvar

Chromatin Variation Across Regions

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/chromVAR.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-chromvar/meta.yaml

Links:

biotools: chromvar

Determine variation in chromatin accessibility across sets of annotations or peaks. Designed primarily for single-cell or sparse chromatin accessibility data, e.g. from scATAC-seq or sparse bulk ATAC or DNAse-seq experiments.

package bioconductor-chromvar

(downloads) docker_bioconductor-chromvar

Versions:
1.20.0-11.20.0-01.16.0-21.16.0-11.16.0-01.14.0-01.12.0-11.12.0-01.10.0-0

1.20.0-11.20.0-01.16.0-21.16.0-11.16.0-01.14.0-01.12.0-11.12.0-01.10.0-01.8.0-01.6.0-11.4.1-01.4.0-11.4.0-01.2.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-chromvar

and update with:

conda update bioconductor-chromvar

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chromvar:<tag>

(see bioconductor-chromvar/tags for valid values for <tag>)

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