- recipe bioconductor-cicero
Precict cis-co-accessibility from single-cell chromatin accessibility data
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/cicero.html
- License
MIT + file LICENSE
- Recipe
Cicero computes putative cis-regulatory maps from single-cell chromatin accessibility data. It also extends monocle 2 for use in chromatin accessibility data.
- package bioconductor-cicero¶
-
- Versions
1.12.0-0
,1.10.0-0
,1.8.1-0
,1.8.0-0
,1.6.0-0
,1.4.0-0
,1.2.0-1
,1.0.14-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-gviz
>=1.38.0,<1.39.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-monocle
>=2.22.0,<2.23.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
r-assertthat
>=0.2.0
r-base
>=4.1,<4.2.0a0
r-data.table
>=1.10.4
r-dplyr
>=0.7.4
r-fnn
>=1.1
r-ggplot2
>=2.2.1
r-glasso
>=1.8
r-igraph
>=1.1.0
r-matrix
>=1.2-12
r-plyr
>=1.8.4
r-reshape2
>=1.4.3
r-stringr
>=1.2.0
r-tibble
>=1.4.2
r-vgam
>=1.0-5
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-cicero
and update with:
conda update bioconductor-cicero
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cicero:<tag>
(see bioconductor-cicero/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cicero/README.html)