recipe bioconductor-cicero

Cicero computes putative cis-regulatory maps from single-cell chromatin accessibility data. It also extends monocle 2 for use in chromatin accessibility data.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/cicero.html

License

MIT + file LICENSE

Recipe

/bioconductor-cicero/meta.yaml

package bioconductor-cicero

(downloads) docker_bioconductor-cicero

Versions

1.0.14-0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-gviz

>=1.26.0,<1.27.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-monocle

>=2.10.0,<2.11.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends r-assertthat

>=0.2.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-data.table

>=1.10.4

Depends r-dplyr

>=0.7.4

Depends r-fnn

>=1.1

Depends r-ggplot2

>=2.2.1

Depends r-glasso

>=1.8

Depends r-igraph

>=1.1.0

Depends r-matrix

>=1.2-12

Depends r-plyr

>=1.8.4

Depends r-reshape2

>=1.4.3

Depends r-stringr

>=1.2.0

Depends r-tibble

>=1.4.2

Depends r-vgam

>=1.0-5

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cicero

and update with:

conda update bioconductor-cicero

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cicero:<tag>

(see bioconductor-cicero/tags for valid values for <tag>)