-
recipe
bioconductor-cicero¶ Cicero computes putative cis-regulatory maps from single-cell chromatin accessibility data. It also extends monocle 2 for use in chromatin accessibility data.
- Homepage
- License
MIT + file LICENSE
- Recipe
-
package
bioconductor-cicero¶ 
- Versions
1.0.14-0
- Depends bioconductor-biobase
>=2.42.0,<2.43.0
- Depends bioconductor-biocgenerics
>=0.28.0,<0.29.0
- Depends bioconductor-genomicranges
>=1.34.0,<1.35.0
- Depends bioconductor-gviz
>=1.26.0,<1.27.0
- Depends bioconductor-iranges
>=2.16.0,<2.17.0
- Depends bioconductor-monocle
>=2.10.0,<2.11.0
- Depends bioconductor-s4vectors
>=0.20.0,<0.21.0
- Depends r-assertthat
>=0.2.0
- Depends r-base
>=3.5.1,<3.5.2.0a0
- Depends r-data.table
>=1.10.4
- Depends r-dplyr
>=0.7.4
- Depends r-fnn
>=1.1
- Depends r-ggplot2
>=2.2.1
- Depends r-glasso
>=1.8
- Depends r-igraph
>=1.1.0
- Depends r-matrix
>=1.2-12
- Depends r-plyr
>=1.8.4
- Depends r-reshape2
>=1.4.3
- Depends r-stringr
>=1.2.0
- Depends r-tibble
>=1.4.2
- Depends r-vgam
>=1.0-5
- Requirements
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-cicero
and update with:
conda update bioconductor-cicero
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cicero:<tag>
(see bioconductor-cicero/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cicero/README.html)