recipe bioconductor-cicero

Cicero computes putative cis-regulatory maps from single-cell chromatin accessibility data. It also extends monocle 2 for use in chromatin accessibility data.

Homepage

https://bioconductor.org/packages/3.8/bioc/html/cicero.html

License

MIT + file LICENSE

Recipe

/bioconductor-cicero/meta.yaml

package bioconductor-cicero

Versions

1.0.14-0

Depends

• bioconductor-biobase >=2.42.0,<2.43.0

• bioconductor-biocgenerics >=0.28.0,<0.29.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-gviz >=1.26.0,<1.27.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-monocle >=2.10.0,<2.11.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• r-assertthat >=0.2.0

• r-base >=3.5.1,<3.5.2.0a0

• r-data.table >=1.10.4

• r-dplyr >=0.7.4

• r-fnn >=1.1

• r-ggplot2 >=2.2.1

• r-glasso >=1.8

• r-igraph >=1.1.0

• r-matrix >=1.2-12

• r-plyr >=1.8.4

• r-reshape2 >=1.4.3

• r-stringr >=1.2.0

• r-tibble >=1.4.2

• r-vgam >=1.0-5

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cicero

and update with:

conda update bioconductor-cicero

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cicero:<tag>

(see bioconductor-cicero/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cicero/README.html)