recipe bioconductor-cindex

The CINdex package addresses important area of high-throughput genomic analysis. It allows the automated processing and analysis of the experimental DNA copy number data generated by Affymetrix SNP 6.0 arrays or similar high throughput technologies. It calculates the chromosome instability (CIN) index that allows to quantitatively characterize genome-wide DNA copy number alterations as a measure of chromosomal instability. This package calculates not only overall genomic instability, but also instability in terms of copy number gains and losses separately at the chromosome and cytoband level.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/CINdex.html

License

GPL (>= 2)

Recipe

/bioconductor-cindex/meta.yaml

Links

biotools: cindex, doi: 10.1038/nmeth.3252

package bioconductor-cindex

(downloads) docker_bioconductor-cindex

Versions

1.12.0-1, 1.10.0-1, 1.10.0-0, 1.8.0-0, 1.6.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cindex

and update with:

conda update bioconductor-cindex

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cindex:<tag>

(see bioconductor-cindex/tags for valid values for <tag>)