recipe bioconductor-clipper

Implements topological gene set analysis using a two-step empirical approach. It exploits graph decomposition theory to create a junction tree and reconstruct the most relevant signal path. In the first step clipper selects significant pathways according to statistical tests on the means and the concentration matrices of the graphs derived from pathway topologies. Then, it “clips” the whole pathway identifying the signal paths having the greatest association with a specific phenotype.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/clipper.html

License

AGPL-3

Recipe

/bioconductor-clipper/meta.yaml

package bioconductor-clipper

(downloads) docker_bioconductor-clipper

Versions

1.22.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-clipper

and update with:

conda update bioconductor-clipper

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-clipper:<tag>

(see bioconductor-clipper/tags for valid values for <tag>)