recipe bioconductor-cllmethylation

Methylation data of primary CLL samples in PACE project

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/CLLmethylation.html

License:

LGPL

Recipe:

/bioconductor-cllmethylation/meta.yaml

The package includes DNA methylation data for the primary Chronic Lymphocytic Leukemia samples included in the Primary Blood Cancer Encyclopedia (PACE) project. Raw data from the 450k DNA methylation arrays is stored in the European Genome-Phenome Archive (EGA) under accession number EGAS0000100174. For more information concerning the project please refer to the paper "Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oles M, Lu J et al., J. Clin. Invest. (2018) and R/Bioconductor package BloodCancerMultiOmics2017.

package bioconductor-cllmethylation

Versions:

1.18.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1, 

1.18.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.2.0-0

Depends:

• bioconductor-data-packages >=20221108

• bioconductor-experimenthub >=2.6.0,<2.7.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-cllmethylation

and update with:

conda update bioconductor-cllmethylation

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cllmethylation:<tag>

(see bioconductor-cllmethylation/tags for valid values for <tag>)

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