recipe bioconductor-clusterexperiment

Compare Clusterings for Single-Cell Sequencing

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/clusterExperiment.html

License:

Artistic-2.0

Recipe:

/bioconductor-clusterexperiment/meta.yaml

Provides functionality for running and comparing many different clusterings of single-cell sequencing data or other large mRNA Expression data sets.

package bioconductor-clusterexperiment

Versions:

2.18.0-0,  2.14.0-2,  2.14.0-1,  2.14.0-0,  2.12.0-0,  2.10.1-0,  2.10.0-0,  2.8.0-0,  2.6.0-0, 

2.18.0-0,  2.14.0-2,  2.14.0-1,  2.14.0-0,  2.12.0-0,  2.10.1-0,  2.10.0-0,  2.8.0-0,  2.6.0-0,  2.4.4-0,  2.2.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocsingular >=1.14.0,<1.15.0

• bioconductor-delayedarray >=0.24.0,<0.25.0

• bioconductor-edger >=3.40.0,<3.41.0

• bioconductor-hdf5array >=1.26.0,<1.27.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-mbkmeans >=1.14.0,<1.15.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• bioconductor-zinbwave >=1.20.0,<1.21.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-ape >=5.0

• r-base >=4.2,<4.3.0a0

• r-cluster

• r-howmany

• r-kernlab

• r-locfdr

• r-matrix

• r-matrixstats

• r-nmf

• r-phylobase

• r-pracma

• r-rcolorbrewer

• r-rcpp

• r-scales

• r-stringr

Required By:

• bioconductor-netsmooth

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-clusterexperiment

and update with:

conda update bioconductor-clusterexperiment

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-clusterexperiment:<tag>

(see bioconductor-clusterexperiment/tags for valid values for <tag>)

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