recipe bioconductor-clusterexperiment

Provides functionality for running and comparing many different clusterings of single-cell sequencing data or other large mRNA Expression data sets.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/clusterExperiment.html

License

Artistic-2.0

Recipe

/bioconductor-clusterexperiment/meta.yaml

package bioconductor-clusterexperiment

(downloads) docker_bioconductor-clusterexperiment

Versions

2.2.0-0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-delayedarray

>=0.8.0,<0.9.0

Depends bioconductor-edger

>=3.24.0,<3.25.0

Depends bioconductor-hdf5array

>=1.10.0,<1.11.0

Depends bioconductor-limma

>=3.38.0,<3.39.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends bioconductor-singlecellexperiment

>=1.4.0,<1.5.0

Depends bioconductor-summarizedexperiment

>=1.12.0,<1.13.0

Depends bioconductor-zinbwave

>=1.4.0,<1.5.0

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends r-ape

>=5.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-cluster

Depends r-dendextend

Depends r-howmany

Depends r-kernlab

Depends r-locfdr

Depends r-matrixstats

Depends r-nmf

Depends r-phylobase

Depends r-rcolorbrewer

Depends r-rcpp

Depends r-rspectra

Depends r-scales

Depends r-stringr

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-clusterexperiment

and update with:

conda update bioconductor-clusterexperiment

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-clusterexperiment:<tag>

(see bioconductor-clusterexperiment/tags for valid values for <tag>)