- recipe bioconductor-clusterexperiment
Compare Clusterings for Single-Cell Sequencing
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/clusterExperiment.html
- License:
Artistic-2.0
- Recipe:
Provides functionality for running and comparing many different clusterings of single-cell sequencing data or other large mRNA Expression data sets.
- package bioconductor-clusterexperiment¶
-
- Versions:
2.18.0-0
,2.14.0-2
,2.14.0-1
,2.14.0-0
,2.12.0-0
,2.10.1-0
,2.10.0-0
,2.8.0-0
,2.6.0-0
,2.18.0-0
,2.14.0-2
,2.14.0-1
,2.14.0-0
,2.12.0-0
,2.10.1-0
,2.10.0-0
,2.8.0-0
,2.6.0-0
,2.4.4-0
,2.2.0-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biocsingular
>=1.14.0,<1.15.0
bioconductor-delayedarray
>=0.24.0,<0.25.0
bioconductor-edger
>=3.40.0,<3.41.0
bioconductor-hdf5array
>=1.26.0,<1.27.0
bioconductor-limma
>=3.54.0,<3.55.0
bioconductor-mbkmeans
>=1.14.0,<1.15.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
bioconductor-zinbwave
>=1.20.0,<1.21.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
libstdcxx-ng
>=12
r-ape
>=5.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-clusterexperiment
and update with:
conda update bioconductor-clusterexperiment
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-clusterexperiment:<tag>
(see bioconductor-clusterexperiment/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-clusterexperiment/README.html)