-
recipe
bioconductor-clusterexperiment¶ Provides functionality for running and comparing many different clusterings of single-cell sequencing data or other large mRNA Expression data sets.
- Homepage
https://bioconductor.org/packages/3.9/bioc/html/clusterExperiment.html
- License
Artistic-2.0
- Recipe
-
package
bioconductor-clusterexperiment¶ 
- Versions
2.2.0-0
- Depends bioconductor-biocgenerics
>=0.28.0,<0.29.0
- Depends bioconductor-delayedarray
>=0.8.0,<0.9.0
- Depends bioconductor-edger
>=3.24.0,<3.25.0
- Depends bioconductor-hdf5array
>=1.10.0,<1.11.0
- Depends bioconductor-limma
>=3.38.0,<3.39.0
- Depends bioconductor-s4vectors
>=0.20.0,<0.21.0
- Depends bioconductor-singlecellexperiment
>=1.4.0,<1.5.0
- Depends bioconductor-summarizedexperiment
>=1.12.0,<1.13.0
- Depends bioconductor-zinbwave
>=1.4.0,<1.5.0
- Depends libgcc-ng
>=7.3.0
- Depends libstdcxx-ng
>=7.3.0
- Depends r-ape
>=5.0
- Depends r-base
>=3.5.1,<3.5.2.0a0
- Depends r-cluster
- Depends r-dendextend
- Depends r-howmany
- Depends r-kernlab
- Depends r-locfdr
- Depends r-matrixstats
- Depends r-nmf
- Depends r-phylobase
- Depends r-rcolorbrewer
- Depends r-rcpp
- Depends r-rspectra
- Depends r-scales
- Depends r-stringr
- Requirements
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-clusterexperiment
and update with:
conda update bioconductor-clusterexperiment
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-clusterexperiment:<tag>
(see bioconductor-clusterexperiment/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-clusterexperiment/README.html)