recipe bioconductor-clusterjudge

Judging Quality of Clustering Methods using Mutual Information






ClusterJudge implements the functions, examples and other software published as an algorithm by Gibbons, FD and Roth FP. The article is called "Judging the Quality of Gene Expression-Based Clustering Methods Using Gene Annotation" and it appeared in Genome Research, vol. 12, pp1574-1581 (2002). See package?ClusterJudge for an overview.

package bioconductor-clusterjudge

(downloads) docker_bioconductor-clusterjudge



depends r-base:


depends r-httr:

depends r-infotheo:

depends r-jsonlite:

depends r-lattice:

depends r-latticeextra:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-clusterjudge

and update with::

   mamba update bioconductor-clusterjudge

To create a new environment, run:

mamba create --name myenvname bioconductor-clusterjudge

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-clusterjudge/tags`_ for valid values for ``<tag>``)

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