recipe bioconductor-clusterprofiler

A universal enrichment tool for interpreting omics data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/clusterProfiler.html

License:

Artistic-2.0

Recipe:

/bioconductor-clusterprofiler/meta.yaml

Links:

biotools: clusterprofiler

This package supports functional characteristics of both coding and non-coding genomics data for thousands of species with up-to-date gene annotation. It provides a univeral interface for gene functional annotation from a variety of sources and thus can be applied in diverse scenarios. It provides a tidy interface to access, manipulate, and visualize enrichment results to help users achieve efficient data interpretation. Datasets obtained from multiple treatments and time points can be analyzed and compared in a single run, easily revealing functional consensus and differences among distinct conditions.

package bioconductor-clusterprofiler

Versions:

4.6.0-0,  4.2.0-0,  4.0.0-0,  3.18.1-0,  3.18.0-0,  3.16.0-0,  3.14.0-0,  3.12.0-1,  3.10.1-0, 

4.6.0-0,  4.2.0-0,  4.0.0-0,  3.18.1-0,  3.18.0-0,  3.16.0-0,  3.14.0-0,  3.12.0-1,  3.10.1-0,  3.8.1-0,  3.6.0-0,  3.4.4-0,  3.0.5-0,  3.0.4-1,  2.4.3-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-dose >=3.24.0,<3.25.0

• bioconductor-enrichplot >=1.18.0,<1.19.0

• bioconductor-go.db >=3.16.0,<3.17.0

• bioconductor-gosemsim >=2.24.0,<2.25.0

• bioconductor-qvalue >=2.30.0,<2.31.0

• r-base >=4.2,<4.3.0a0

• r-downloader

• r-dplyr

• r-gson >=0.0.7

• r-magrittr

• r-plyr

• r-rlang

• r-tidyr

• r-yulab.utils

Required By:

• bioconductor-conclus

• bioconductor-moonlightr

• vsclust

• r-pathwaytmb

• bioconductor-tcgabiolinksgui

• bioconductor-eegc

• bioconductor-irisfgm

• r-dgeclustering

• bioconductor-microbiomeprofiler

• bioconductor-cemitool

• bioconductor-methylgsa

• bioconductor-mirsponger

• bioconductor-panomir

• r-tinyarray

• bcbio-rnaseq

• r-bcbiornaseq

• bioconductor-pfp

• bioconductor-metaphor

• bioconductor-biocancer

• bioconductor-famat

• bioconductor-gosorensen

• bioconductor-multisight

• bioconductor-timirgen

• bioconductor-debrowser

• bioconductor-mageckflute

• bioconductor-netboxr

• bioconductor-pigengene

• bioconductor-enrichtf

• bioconductor-signaturesearch

• bioconductor-easycelltype

• cellsnake

• bioconductor-cetf

• bioconductor-gdcrnatools

• bioconductor-fcoex

• bioconductor-rnaseqr

• bioconductor-esatac

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-clusterprofiler

and update with:

conda update bioconductor-clusterprofiler

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-clusterprofiler:<tag>

(see bioconductor-clusterprofiler/tags for valid values for <tag>)

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