- recipe bioconductor-clusterprofiler
A universal enrichment tool for interpreting omics data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/clusterProfiler.html
- License:
Artistic-2.0
- Recipe:
- Links:
biotools: clusterprofiler
This package supports functional characteristics of both coding and non-coding genomics data for thousands of species with up-to-date gene annotation. It provides a univeral interface for gene functional annotation from a variety of sources and thus can be applied in diverse scenarios. It provides a tidy interface to access, manipulate, and visualize enrichment results to help users achieve efficient data interpretation. Datasets obtained from multiple treatments and time points can be analyzed and compared in a single run, easily revealing functional consensus and differences among distinct conditions.
- package bioconductor-clusterprofiler¶
-
- Versions:
4.6.0-0
,4.2.0-0
,4.0.0-0
,3.18.1-0
,3.18.0-0
,3.16.0-0
,3.14.0-0
,3.12.0-1
,3.10.1-0
,4.6.0-0
,4.2.0-0
,4.0.0-0
,3.18.1-0
,3.18.0-0
,3.16.0-0
,3.14.0-0
,3.12.0-1
,3.10.1-0
,3.8.1-0
,3.6.0-0
,3.4.4-0
,3.0.5-0
,3.0.4-1
,2.4.3-0
- Depends:
bioconductor-annotationdbi
>=1.60.0,<1.61.0
bioconductor-dose
>=3.24.0,<3.25.0
bioconductor-enrichplot
>=1.18.0,<1.19.0
bioconductor-go.db
>=3.16.0,<3.17.0
bioconductor-gosemsim
>=2.24.0,<2.25.0
bioconductor-qvalue
>=2.30.0,<2.31.0
r-base
>=4.2,<4.3.0a0
r-gson
>=0.0.7
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-clusterprofiler
and update with:
conda update bioconductor-clusterprofiler
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-clusterprofiler:<tag>
(see bioconductor-clusterprofiler/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-clusterprofiler/README.html)