recipe bioconductor-clusterprofiler

This package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/clusterProfiler.html

License

Artistic-2.0

Recipe

/bioconductor-clusterprofiler/meta.yaml

Links

biotools: clusterprofiler

package bioconductor-clusterprofiler

(downloads) docker_bioconductor-clusterprofiler

Versions

3.10.1-0, 3.8.1-0, 3.6.0-0, 3.4.4-0, 3.0.5-0, 3.0.4-1, 2.4.3-0

Depends bioconductor-annotationdbi

>=1.44.0,<1.45.0

Depends bioconductor-dose

>=3.8.0,<3.9.0

Depends bioconductor-enrichplot

>=1.2.0,<1.3.0

Depends bioconductor-go.db

>=3.7.0,<3.8.0

Depends bioconductor-gosemsim

>=2.8.0,<2.9.0

Depends bioconductor-qvalue

>=2.14.0,<2.15.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-ggplot2

Depends r-magrittr

Depends r-plyr

Depends r-rvcheck

Depends r-tidyr

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-clusterprofiler

and update with:

conda update bioconductor-clusterprofiler

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-clusterprofiler:<tag>

(see bioconductor-clusterprofiler/tags for valid values for <tag>)