recipe bioconductor-clusterstab

Compute cluster stability scores for microarray data

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/clusterStab.html

License:

Artistic-2.0

Recipe:

/bioconductor-clusterstab/meta.yaml

Links:

biotools: clusterstab, doi: 10.1038/nmeth.3252

This package can be used to estimate the number of clusters in a set of microarray data, as well as test the stability of these clusters.

package bioconductor-clusterstab

(downloads) docker_bioconductor-clusterstab

versions:
1.74.0-0,  1.72.0-0,  1.70.0-0,  1.66.0-0,  1.64.0-0,  1.62.0-1,  1.62.0-0,  1.60.0-0,  1.58.0-0, 

1.74.0-0,  1.72.0-0,  1.70.0-0,  1.66.0-0,  1.64.0-0,  1.62.0-1,  1.62.0-0,  1.60.0-0,  1.58.0-0,  1.56.0-1,  1.54.0-0,  1.52.0-0,  1.50.0-0

depends bioconductor-biobase:

>=2.62.0,<2.63.0

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-clusterstab

and update with::

   mamba update bioconductor-clusterstab

To create a new environment, run:

mamba create --name myenvname bioconductor-clusterstab

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-clusterstab:<tag>

(see `bioconductor-clusterstab/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-clusterstab/README.html)