- recipe bioconductor-cmapr
CMap Tools in R
- Homepage:
- License:
file LICENSE
- Recipe:
The Connectivity Map (CMap) is a massive resource of perturbational gene expression profiles built by researchers at the Broad Institute and funded by the NIH Library of Integrated Network-Based Cellular Signatures (LINCS) program. Please visit https://clue.io for more information. The cmapR package implements methods to parse, manipulate, and write common CMap data objects, such as annotated matrices and collections of gene sets.
- package bioconductor-cmapr¶
-
- Versions:
1.6.0-0
,1.4.0-0
,1.0.0-0
- Depends:
bioconductor-flowcore
>=2.6.0,<2.7.0
bioconductor-rhdf5
>=2.38.0,<2.39.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-cmapr
and update with:
conda update bioconductor-cmapr
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cmapr:<tag>
(see bioconductor-cmapr/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cmapr/README.html)