recipe bioconductor-cmapr

CMap Tools in R

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/cmapR.html

License:

file LICENSE

Recipe:

/bioconductor-cmapr/meta.yaml

The Connectivity Map (CMap) is a massive resource of perturbational gene expression profiles built by researchers at the Broad Institute and funded by the NIH Library of Integrated Network-Based Cellular Signatures (LINCS) program. Please visit https://clue.io for more information. The cmapR package implements methods to parse, manipulate, and write common CMap data objects, such as annotated matrices and collections of gene sets.

package bioconductor-cmapr

Versions:

1.10.0-0,  1.6.0-0,  1.4.0-0,  1.0.0-0

Depends:

• bioconductor-flowcore >=2.10.0,<2.11.0

• bioconductor-rhdf5 >=2.42.0,<2.43.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-matrixstats

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-cmapr

and update with:

conda update bioconductor-cmapr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cmapr:<tag>

(see bioconductor-cmapr/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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