recipe bioconductor-cn.farms

cn.FARMS - factor analysis for copy number estimation

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/cn.farms.html

License:

LGPL (>= 2.0)

Recipe:

/bioconductor-cn.farms/meta.yaml

Links:

biotools: cn.farms, doi: 10.1093/nar/gkr197

This package implements the cn.FARMS algorithm for copy number variation (CNV) analysis. cn.FARMS allows to analyze the most common Affymetrix (250K-SNP6.0) array types, supports high-performance computing using snow and ff.

package bioconductor-cn.farms

Versions:

1.46.0-0,  1.42.0-2,  1.42.0-1,  1.42.0-0,  1.40.0-0,  1.38.0-1,  1.38.0-0,  1.36.0-0,  1.34.0-0, 

1.46.0-0,  1.42.0-2,  1.42.0-1,  1.42.0-0,  1.40.0-0,  1.38.0-1,  1.38.0-0,  1.36.0-0,  1.34.0-0,  1.32.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-0

Depends:

• bioconductor-affxparser >=1.70.0,<1.71.0

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-dnacopy >=1.72.0,<1.73.0

• bioconductor-oligo >=1.62.0,<1.63.0

• bioconductor-oligoclasses >=1.60.0,<1.61.0

• bioconductor-preprocesscore >=1.60.0,<1.61.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-dbi

• r-ff

• r-lattice

• r-snow

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-cn.farms

and update with:

conda update bioconductor-cn.farms

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cn.farms:<tag>

(see bioconductor-cn.farms/tags for valid values for <tag>)

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