recipe bioconductor-cntools

Convert segment data into a region by sample matrix to allow for other high level computational analyses.

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/CNTools.html

License:

LGPL

Recipe:

/bioconductor-cntools/meta.yaml

Links:

biotools: cntools, doi: 10.1038/nmeth.3252

This package provides tools to convert the output of segmentation analysis using DNAcopy to a matrix structure with overlapping segments as rows and samples as columns so that other computational analyses can be applied to segmented data

package bioconductor-cntools

(downloads) docker_bioconductor-cntools

Versions:
1.54.0-01.50.0-21.50.0-11.50.0-01.48.0-01.46.0-11.46.0-01.44.0-01.42.0-0

1.54.0-01.50.0-21.50.0-11.50.0-01.48.0-01.46.0-11.46.0-01.44.0-01.42.0-01.40.0-11.38.0-01.36.0-01.34.0-01.32.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-cntools

and update with:

conda update bioconductor-cntools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cntools:<tag>

(see bioconductor-cntools/tags for valid values for <tag>)

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