recipe bioconductor-cntools

Convert segment data into a region by sample matrix to allow for other high level computational analyses.

Homepage

https://bioconductor.org/packages/3.11/bioc/html/CNTools.html

License

LGPL

Recipe

/bioconductor-cntools/meta.yaml

Links

biotools: cntools, doi: 10.1038/nmeth.3252

This package provides tools to convert the output of segmentation analysis using DNAcopy to a matrix structure with overlapping segments as rows and samples as columns so that other computational analyses can be applied to segmented data

package bioconductor-cntools

(downloads) docker_bioconductor-cntools

Versions

1.44.0-01.42.0-01.40.0-11.38.0-01.36.0-01.34.0-01.32.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cntools

and update with:

conda update bioconductor-cntools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cntools:<tag>

(see bioconductor-cntools/tags for valid values for <tag>)