recipe bioconductor-cogena

co-expressed gene-set enrichment analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/cogena.html

License:

LGPL-3

Recipe:

/bioconductor-cogena/meta.yaml

Links:

biotools: cogena, doi: 10.1186/s12864-016-2737-8

cogena is a workflow for co-expressed gene-set enrichment analysis. It aims to discovery smaller scale, but highly correlated cellular events that may be of great biological relevance. A novel pipeline for drug discovery and drug repositioning based on the cogena workflow is proposed. Particularly, candidate drugs can be predicted based on the gene expression of disease-related data, or other similar drugs can be identified based on the gene expression of drug-related data. Moreover, the drug mode of action can be disclosed by the associated pathway analysis. In summary, cogena is a flexible workflow for various gene set enrichment analysis for co-expressed genes, with a focus on pathway/GO analysis and drug repositioning.

package bioconductor-cogena

(downloads) docker_bioconductor-cogena

Versions:
1.32.0-01.28.0-01.26.0-01.24.0-11.24.0-01.22.0-01.20.0-01.18.0-11.16.0-0

1.32.0-01.28.0-01.26.0-01.24.0-11.24.0-01.22.0-01.20.0-01.18.0-11.16.0-01.14.0-01.12.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-cogena

and update with:

conda update bioconductor-cogena

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cogena:<tag>

(see bioconductor-cogena/tags for valid values for <tag>)

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