recipe bioconductor-comet

coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns

Homepage

https://bioconductor.org/packages/3.10/bioc/html/coMET.html

License

GPL (>= 2)

Recipe

/bioconductor-comet/meta.yaml

Visualisation of EWAS results in a genomic region. In addition to phenotype-association P-values, coMET also generates plots of co-methylation patterns and provides a series of annotation tracks. It can be used to other omic-wide association scans as long as the data can be translated to genomic level and for any species.

package bioconductor-comet

Versions

1.18.0-0, 1.16.0-1, 1.14.0-0

Depends

• bioconductor-biomart >=2.42.0,<2.43.0

• bioconductor-genomicranges >=1.38.0,<1.39.0

• bioconductor-gviz >=1.30.0,<1.31.0

• bioconductor-iranges >=2.20.0,<2.21.0

• bioconductor-rtracklayer >=1.46.0,<1.47.0

• bioconductor-s4vectors >=0.24.0,<0.25.0

• r-base >=3.6,<3.7.0a0

• r-colortools

• r-corrplot

• r-gridextra

• r-hash

• r-psych

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-comet

and update with:

conda update bioconductor-comet

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-comet:<tag>

(see bioconductor-comet/tags for valid values for <tag>)

Link to this page

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