recipe bioconductor-comet

coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns

Homepage

https://bioconductor.org/packages/3.11/bioc/html/coMET.html

License

GPL (>= 2)

Recipe

/bioconductor-comet/meta.yaml

Visualisation of EWAS results in a genomic region. In addition to phenotype-association P-values, coMET also generates plots of co-methylation patterns and provides a series of annotation tracks. It can be used to other omic-wide association scans as long as the data can be translated to genomic level and for any species.

package bioconductor-comet

Versions

1.20.0-0,  1.18.0-0,  1.16.0-1,  1.14.0-0

Depends

• bioconductor-biomart >=2.44.0,<2.45.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-gviz >=1.32.0,<1.33.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-rtracklayer >=1.48.0,<1.49.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• r-base >=4.0,<4.1.0a0

• r-colortools

• r-corrplot

• r-gridextra

• r-hash

• r-psych

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-comet

and update with:

conda update bioconductor-comet

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-comet:<tag>

(see bioconductor-comet/tags for valid values for <tag>)

Link to this page

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