- recipe bioconductor-comet
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns
- Homepage:
- License:
GPL (>= 2)
- Recipe:
Visualisation of EWAS results in a genomic region. In addition to phenotype-association P-values, coMET also generates plots of co-methylation patterns and provides a series of annotation tracks. It can be used to other omic-wide association scans as long as the data can be translated to genomic level and for any species.
- package bioconductor-comet¶
-
- Versions:
1.26.0-0
,1.24.0-0
,1.22.0-1
,1.22.0-0
,1.20.0-0
,1.18.0-0
,1.16.0-1
,1.14.0-0
- Depends:
bioconductor-biomart
>=2.50.0,<2.51.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-gviz
>=1.38.0,<1.39.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-rtracklayer
>=1.54.0,<1.55.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-comet
and update with:
conda update bioconductor-comet
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-comet:<tag>
(see bioconductor-comet/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-comet/README.html)