recipe bioconductor-complexheatmap

Make Complex Heatmaps

Homepage:

https://bioconductor.org/packages/3.17/bioc/html/ComplexHeatmap.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-complexheatmap/meta.yaml

Links:

biotools: complexheatmap

Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential patterns. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports various annotation graphics.

package bioconductor-complexheatmap

versions:

2.16.0-0,  2.14.0-0,  2.10.0-0,  2.8.0-0,  2.6.2-1,  2.6.2-0,  2.6.0-0,  2.4.2-0,  2.2.0-0, 

2.16.0-0,  2.14.0-0,  2.10.0-0,  2.8.0-0,  2.6.2-1,  2.6.2-0,  2.6.0-0,  2.4.2-0,  2.2.0-0,  2.0.0-1,  2.0.0-0,  1.20.0-0,  1.18.1-0,  1.17.1-0,  1.14.0-0,  1.6.0-1,  1.6.0-0

depends bioconductor-iranges:

>=2.34.0,<2.35.0

depends r-base:

>=4.3,<4.4.0a0

depends r-circlize:

>=0.4.14

depends r-clue:

depends r-codetools:

depends r-colorspace:

depends r-digest:

depends r-doparallel:

depends r-foreach:

depends r-getoptlong:

depends r-globaloptions:

>=0.1.0

depends r-matrixstats:

depends r-png:

depends r-rcolorbrewer:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-complexheatmap

and update with::

   mamba update bioconductor-complexheatmap

To create a new environment, run:

mamba create --name myenvname bioconductor-complexheatmap

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-complexheatmap:<tag>

(see `bioconductor-complexheatmap/tags`_ for valid values for ``<tag>``)

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