recipe bioconductor-connectivitymap

Functional connections between drugs, genes and diseases as revealed by common gene-expression changes

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/ConnectivityMap.html

License:

GPL-3

Recipe:

/bioconductor-connectivitymap/meta.yaml

The Broad Institute's Connectivity Map (cmap02) is a "large reference catalogue of gene-expression data from cultured human cells perturbed with many chemicals and genetic reagents", containing more than 7000 gene expression profiles and 1300 small molecules.

package bioconductor-connectivitymap

(downloads) docker_bioconductor-connectivitymap

Versions:
1.33.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1, 

1.33.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-connectivitymap

and update with:

conda update bioconductor-connectivitymap

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-connectivitymap:<tag>

(see bioconductor-connectivitymap/tags for valid values for <tag>)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-connectivitymap/README.html)