recipe bioconductor-consensus

Cross-platform consensus analysis of genomic measurements via interlaboratory testing method

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/consensus.html

License:

BSD_3_clause + file LICENSE

Recipe:

/bioconductor-consensus/meta.yaml

An implementation of the American Society for Testing and Materials (ASTM) Standard E691 for interlaboratory testing procedures, designed for cross-platform genomic measurements. Given three (3) or more genomic platforms or laboratory protocols, this package provides interlaboratory testing procedures giving per-locus comparisons for sensitivity and precision between platforms.

package bioconductor-consensus

(downloads) docker_bioconductor-consensus

versions:
1.24.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.8.0-0, 

1.24.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.2-0,  1.2.0-0,  1.0.2-0

depends r-base:

>=4.4,<4.5.0a0

depends r-gplots:

depends r-matrixstats:

depends r-rcolorbrewer:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-consensus

and update with::

   mamba update bioconductor-consensus

To create a new environment, run:

mamba create --name myenvname bioconductor-consensus

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-consensus:<tag>

(see `bioconductor-consensus/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-consensus/README.html)