-
recipe
bioconductor-consensusde¶ This package allows users to perform DE analysis using multiple algorithms. It seeks consensus from multiple methods. Currently it supports “Voom”, “EdgeR” and “DESeq”. It uses RUV-seq (optional) to remove batch effects.
- Homepage
https://bioconductor.org/packages/3.9/bioc/html/consensusDE.html
- License
GPL-3
- Recipe
-
package
bioconductor-consensusde¶ 
- Versions
1.0.0-0
- Depends bioconductor-airway
>=1.2.0,<1.3.0
- Depends bioconductor-annotationdbi
>=1.44.0,<1.45.0
- Depends bioconductor-biobase
>=2.42.0,<2.43.0
- Depends bioconductor-biocparallel
>=1.16.0,<1.17.0
- Depends bioconductor-biostrings
>=2.50.0,<2.51.0
- Depends bioconductor-deseq2
>=1.22.0,<1.23.0
- Depends bioconductor-edaseq
>=2.16.0,<2.17.0
- Depends bioconductor-edger
>=3.24.0,<3.25.0
- Depends bioconductor-genomicalignments
>=1.18.0,<1.19.0
- Depends bioconductor-genomicfeatures
>=1.34.0,<1.35.0
- Depends bioconductor-limma
>=3.38.0,<3.39.0
- Depends bioconductor-pcamethods
>=1.74.0,<1.75.0
- Depends bioconductor-rsamtools
>=1.34.0,<1.35.0
- Depends bioconductor-ruvseq
>=1.16.0,<1.17.0
- Depends bioconductor-s4vectors
>=0.20.0,<0.21.0
- Depends bioconductor-summarizedexperiment
>=1.12.0,<1.13.0
- Depends bioconductor-txdb.dmelanogaster.ucsc.dm3.ensgene
>=3.2.0,<3.3.0
- Depends r-base
>=3.5.1,<3.5.2.0a0
- Depends r-dendextend
- Depends r-rcolorbrewer
- Requirements
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-consensusde
and update with:
conda update bioconductor-consensusde
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-consensusde:<tag>
(see bioconductor-consensusde/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-consensusde/README.html)