- recipe bioconductor-consensusde
RNA-seq analysis using multiple algorithms
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/consensusDE.html
- License
GPL-3
- Recipe
This package allows users to perform DE analysis using multiple algorithms. It seeks consensus from multiple methods. Currently it supports "Voom", "EdgeR" and "DESeq". It uses RUV-seq (optional) to remove unwanted sources of variation.
- package bioconductor-consensusde¶
-
- Versions
1.12.0-0
,1.10.0-0
,1.8.0-1
,1.8.0-0
,1.6.0-0
,1.4.0-1
,1.2.1-0
,1.0.0-0
- Depends
bioconductor-airway
>=1.14.0,<1.15.0
bioconductor-annotationdbi
>=1.56.0,<1.57.0
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-deseq2
>=1.34.0,<1.35.0
bioconductor-edaseq
>=2.28.0,<2.29.0
bioconductor-edger
>=3.36.0,<3.37.0
bioconductor-ensdb.hsapiens.v86
>=2.99.0,<2.100.0
bioconductor-ensembldb
>=2.18.0,<2.19.0
bioconductor-genomicalignments
>=1.30.0,<1.31.0
bioconductor-genomicfeatures
>=1.46.0,<1.47.0
bioconductor-limma
>=3.50.0,<3.51.0
bioconductor-org.hs.eg.db
>=3.14.0,<3.15.0
bioconductor-pcamethods
>=1.86.0,<1.87.0
bioconductor-rsamtools
>=2.10.0,<2.11.0
bioconductor-ruvseq
>=1.28.0,<1.29.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
bioconductor-txdb.dmelanogaster.ucsc.dm3.ensgene
>=3.2.0,<3.3.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-consensusde
and update with:
conda update bioconductor-consensusde
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-consensusde:<tag>
(see bioconductor-consensusde/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-consensusde/README.html)