-
recipe
bioconductor-consensusde¶ RNA-seq analysis using multiple algorithms
- Homepage
https://bioconductor.org/packages/3.11/bioc/html/consensusDE.html
- License
GPL-3
- Recipe
This package allows users to perform DE analysis using multiple algorithms. It seeks consensus from multiple methods. Currently it supports “Voom”, “EdgeR” and “DESeq”. It uses RUV-seq (optional) to remove unwanted sources of variation.
-
package
bioconductor-consensusde¶ 
- Versions
1.6.0-0, 1.4.0-1, 1.2.1-0, 1.0.0-0
- Depends
bioconductor-airway >=1.8.0,<1.9.0
bioconductor-annotationdbi >=1.50.0,<1.51.0
bioconductor-biobase >=2.48.0,<2.49.0
bioconductor-biocgenerics >=0.34.0,<0.35.0
bioconductor-biocparallel >=1.22.0,<1.23.0
bioconductor-biostrings >=2.56.0,<2.57.0
bioconductor-deseq2 >=1.28.0,<1.29.0
bioconductor-edaseq >=2.22.0,<2.23.0
bioconductor-edger >=3.30.0,<3.31.0
bioconductor-ensdb.hsapiens.v86 >=2.99.0,<2.100.0
bioconductor-ensembldb >=2.12.0,<2.13.0
bioconductor-genomicalignments >=1.24.0,<1.25.0
bioconductor-genomicfeatures >=1.40.0,<1.41.0
bioconductor-limma >=3.44.0,<3.45.0
bioconductor-org.hs.eg.db >=3.11.0,<3.12.0
bioconductor-pcamethods >=1.80.0,<1.81.0
bioconductor-rsamtools >=2.4.0,<2.5.0
bioconductor-ruvseq >=1.22.0,<1.23.0
bioconductor-s4vectors >=0.26.0,<0.27.0
bioconductor-summarizedexperiment >=1.18.0,<1.19.0
bioconductor-txdb.dmelanogaster.ucsc.dm3.ensgene >=3.2.0,<3.3.0
r-base >=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-consensusde
and update with:
conda update bioconductor-consensusde
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-consensusde:<tag>
(see bioconductor-consensusde/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-consensusde/README.html)