-
recipe
bioconductor-consensusde¶ RNA-seq analysis using multiple algorithms
- Homepage
https://bioconductor.org/packages/3.10/bioc/html/consensusDE.html
- License
GPL-3
- Recipe
This package allows users to perform DE analysis using multiple algorithms. It seeks consensus from multiple methods. Currently it supports “Voom”, “EdgeR” and “DESeq”. It uses RUV-seq (optional) to remove unwanted sources of variation.
-
package
bioconductor-consensusde¶ 
- Versions
1.4.0-1, 1.2.1-0, 1.0.0-0
- Depends
bioconductor-airway >=1.6.0,<1.7.0
bioconductor-annotationdbi >=1.48.0,<1.49.0
bioconductor-biobase >=2.46.0,<2.47.0
bioconductor-biocgenerics >=0.32.0,<0.33.0
bioconductor-biocparallel >=1.20.0,<1.21.0
bioconductor-biostrings >=2.54.0,<2.55.0
bioconductor-deseq2 >=1.26.0,<1.27.0
bioconductor-edaseq >=2.20.0,<2.21.0
bioconductor-edger >=3.28.0,<3.29.0
bioconductor-ensdb.hsapiens.v86 >=2.99.0,<2.100.0
bioconductor-ensembldb >=2.10.0,<2.11.0
bioconductor-genomicalignments >=1.22.0,<1.23.0
bioconductor-genomicfeatures >=1.38.0,<1.39.0
bioconductor-limma >=3.42.0,<3.43.0
bioconductor-org.hs.eg.db >=3.10.0,<3.11.0
bioconductor-pcamethods >=1.78.0,<1.79.0
bioconductor-rsamtools >=2.2.0,<2.3.0
bioconductor-ruvseq >=1.20.0,<1.21.0
bioconductor-s4vectors >=0.24.0,<0.25.0
bioconductor-summarizedexperiment >=1.16.0,<1.17.0
bioconductor-txdb.dmelanogaster.ucsc.dm3.ensgene >=3.2.0,<3.3.0
r-base >=3.6,<3.7.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-consensusde
and update with:
conda update bioconductor-consensusde
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-consensusde:<tag>
(see bioconductor-consensusde/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-consensusde/README.html)