-
recipe
bioconductor-consensusde¶ This package allows users to perform DE analysis using multiple algorithms. It seeks consensus from multiple methods. Currently it supports “Voom”, “EdgeR” and “DESeq”. It uses RUV-seq (optional) to remove unwanted sources of variation.
- Homepage
https://bioconductor.org/packages/3.9/bioc/html/consensusDE.html
- License
GPL-3
- Recipe
-
package
bioconductor-consensusde¶ 
- Versions
1.2.1-0, 1.0.0-0
- Depends
bioconductor-airway >=1.4.0,<1.5.0
bioconductor-annotationdbi >=1.46.0,<1.47.0
bioconductor-biobase >=2.44.0,<2.45.0
bioconductor-biocgenerics >=0.30.0,<0.31.0
bioconductor-biocparallel >=1.18.0,<1.19.0
bioconductor-biostrings >=2.52.0,<2.53.0
bioconductor-deseq2 >=1.24.0,<1.25.0
bioconductor-edaseq >=2.18.0,<2.19.0
bioconductor-edger >=3.26.0,<3.27.0
bioconductor-ensdb.hsapiens.v86 >=2.99.0,<2.100.0
bioconductor-ensembldb >=2.8.0,<2.9.0
bioconductor-genomicalignments >=1.20.0,<1.21.0
bioconductor-genomicfeatures >=1.36.0,<1.37.0
bioconductor-limma >=3.40.0,<3.41.0
bioconductor-org.hs.eg.db >=3.8.0,<3.9.0
bioconductor-pcamethods >=1.76.0,<1.77.0
bioconductor-rsamtools >=2.0.0,<2.1.0
bioconductor-ruvseq >=1.18.0,<1.19.0
bioconductor-s4vectors >=0.22.0,<0.23.0
bioconductor-summarizedexperiment >=1.14.0,<1.15.0
bioconductor-txdb.dmelanogaster.ucsc.dm3.ensgene >=3.2.0,<3.3.0
r-base >=3.6,<3.7.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-consensusde
and update with:
conda update bioconductor-consensusde
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-consensusde:<tag>
(see bioconductor-consensusde/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-consensusde/README.html)