-
recipe
bioconductor-consensusov
¶ Gene expression-based subtype classification for high-grade serous ovarian cancer
- Homepage
https://bioconductor.org/packages/3.10/bioc/html/consensusOV.html
- License
Artistic-2.0
- Recipe
This package implements four major subtype classifiers for high-grade serous (HGS) ovarian cancer as described by Helland et al. (PLoS One, 2011), Bentink et al. (PLoS One, 2012), Verhaak et al. (J Clin Invest, 2013), and Konecny et al. (J Natl Cancer Inst, 2014). In addition, the package implements a consensus classifier, which consolidates and improves on the robustness of the proposed subtype classifiers, thereby providing reliable stratification of patients with HGS ovarian tumors of clearly defined subtype.
-
package
bioconductor-consensusov
¶ -
- Versions
1.8.0-0, 1.6.0-1, 1.4.1-0, 1.2.0-0, 1.0.0-0
- Depends
bioconductor-biobase >=2.46.0,<2.47.0
bioconductor-genefu >=2.18.0,<2.19.0
bioconductor-gsva >=1.34.0,<1.35.0
bioconductor-limma >=3.42.0,<3.43.0
r-base >=3.6,<3.7.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-consensusov
and update with:
conda update bioconductor-consensusov
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-consensusov:<tag>
(see bioconductor-consensusov/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-consensusov/README.html)