recipe bioconductor-copa

Functions to perform cancer outlier profile analysis.

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/copa.html

License:

Artistic-2.0

Recipe:

/bioconductor-copa/meta.yaml

COPA is a method to find genes that undergo recurrent fusion in a given cancer type by finding pairs of genes that have mutually exclusive outlier profiles.

package bioconductor-copa

Versions:

1.66.0-0,  1.62.0-2,  1.62.0-1,  1.62.0-0,  1.60.0-0,  1.58.0-1,  1.58.0-0,  1.56.0-0,  1.54.0-0, 

1.66.0-0,  1.62.0-2,  1.62.0-1,  1.62.0-0,  1.60.0-0,  1.58.0-1,  1.58.0-0,  1.56.0-0,  1.54.0-0,  1.52.0-1,  1.50.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-copa

and update with:

conda update bioconductor-copa

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-copa:<tag>

(see bioconductor-copa/tags for valid values for <tag>)

Download stats

Link to this page

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