recipe bioconductor-copa

Functions to perform cancer outlier profile analysis.

Homepage

https://bioconductor.org/packages/3.14/bioc/html/copa.html

License

Artistic-2.0

Recipe

/bioconductor-copa/meta.yaml

COPA is a method to find genes that undergo recurrent fusion in a given cancer type by finding pairs of genes that have mutually exclusive outlier profiles.

package bioconductor-copa

Versions

1.62.0-1,  1.62.0-0,  1.60.0-0,  1.58.0-1,  1.58.0-0,  1.56.0-0,  1.54.0-0,  1.52.0-1,  1.50.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=10.3.0

• liblapack >=3.8.0,<4.0a0

• r-base >=4.1,<4.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-copa

and update with:

conda update bioconductor-copa

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-copa:<tag>

(see bioconductor-copa/tags for valid values for <tag>)

Download stats

Link to this page

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