- recipe bioconductor-copa
Functions to perform cancer outlier profile analysis.
- Homepage
- License
Artistic-2.0
- Recipe
COPA is a method to find genes that undergo recurrent fusion in a given cancer type by finding pairs of genes that have mutually exclusive outlier profiles.
- package bioconductor-copa¶
-
- Versions
1.62.0-1
,1.62.0-0
,1.60.0-0
,1.58.0-1
,1.58.0-0
,1.56.0-0
,1.54.0-0
,1.52.0-1
,1.50.0-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-copa
and update with:
conda update bioconductor-copa
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-copa:<tag>
(see bioconductor-copa/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-copa/README.html)