bioconductor-copynumber

downloads

Penalized least squares regression is applied to fit piecewise constant curves to copy number data to locate genomic regions of constant copy number. Procedures are available for individual segmentation of each sample, joint segmentation of several samples and joint segmentation of the two data tracks from SNP-arrays. Several plotting functions are available for visualization of the data and the segmentation results.

Home http://bioconductor.org/packages/3.6/bioc/html/copynumber.html
Versions 1.16.0, 1.18.0
License Artistic-2.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-copynumber

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-copynumber

and update with:

conda update bioconductor-copynumber

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-copynumber.