recipe bioconductor-copynumberplots

Create Copy-Number Plots using karyoploteR functionality

Homepage:

https://bioconductor.org/packages/3.17/bioc/html/CopyNumberPlots.html

License:

Artistic-2.0

Recipe:

/bioconductor-copynumberplots/meta.yaml

CopyNumberPlots have a set of functions extending karyoploteRs functionality to create beautiful, customizable and flexible plots of copy-number related data.

package bioconductor-copynumberplots

versions:

1.16.0-0,  1.14.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.1-0

depends bioconductor-cn.mops:

>=1.46.0,<1.47.0

depends bioconductor-genomeinfodb:

>=1.36.0,<1.37.0

depends bioconductor-genomicranges:

>=1.52.0,<1.53.0

depends bioconductor-iranges:

>=2.34.0,<2.35.0

depends bioconductor-karyoploter:

>=1.26.0,<1.27.0

depends bioconductor-regioner:

>=1.32.0,<1.33.0

depends bioconductor-rhdf5:

>=2.44.0,<2.45.0

depends bioconductor-rsamtools:

>=2.16.0,<2.17.0

depends bioconductor-summarizedexperiment:

>=1.30.0,<1.31.0

depends bioconductor-variantannotation:

>=1.46.0,<1.47.0

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-copynumberplots

and update with::

   mamba update bioconductor-copynumberplots

To create a new environment, run:

mamba create --name myenvname bioconductor-copynumberplots

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-copynumberplots:<tag>

(see `bioconductor-copynumberplots/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-copynumberplots/README.html)