recipe bioconductor-copynumberplots

Create Copy-Number Plots using karyoploteR functionality

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/CopyNumberPlots.html

License:

Artistic-2.0

Recipe:

/bioconductor-copynumberplots/meta.yaml

CopyNumberPlots have a set of functions extending karyoploteRs functionality to create beautiful, customizable and flexible plots of copy-number related data.

package bioconductor-copynumberplots

Versions:

1.14.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.1-0

Depends:

• bioconductor-cn.mops >=1.44.0,<1.45.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-karyoploter >=1.24.0,<1.25.0

• bioconductor-regioner >=1.30.0,<1.31.0

• bioconductor-rhdf5 >=2.42.0,<2.43.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• bioconductor-variantannotation >=1.44.0,<1.45.0

• r-base >=4.2,<4.3.0a0

Required By:

• bioconductor-cnviz

• bioconductor-cnvfilter

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-copynumberplots

and update with:

conda update bioconductor-copynumberplots

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-copynumberplots:<tag>

(see bioconductor-copynumberplots/tags for valid values for <tag>)

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