- recipe bioconductor-cosmosr
COSMOS (Causal Oriented Search of Multi-Omic Space)
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/cosmosR.html
- License:
GPL-3
- Recipe:
COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets based on prior knowledge of signaling, metabolic, and gene regulatory networks. It estimated the activities of transcrption factors and kinases and finds a network-level causal reasoning. Thereby, COSMOS provides mechanistic hypotheses for experimental observations across mulit-omics datasets.
- package bioconductor-cosmosr¶
-
- Versions:
1.2.0-0
,1.0.0-0
- Depends:
bioconductor-annotationdbi
>=1.56.0,<1.57.0
bioconductor-biomart
>=2.50.0,<2.51.0
bioconductor-carnival
>=2.4.0,<2.5.0
bioconductor-dorothea
>=1.6.0,<1.7.0
bioconductor-gseabase
>=1.56.0,<1.57.0
bioconductor-org.hs.eg.db
>=3.14.0,<3.15.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-cosmosr
and update with:
conda update bioconductor-cosmosr
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cosmosr:<tag>
(see bioconductor-cosmosr/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cosmosr/README.html)