recipe bioconductor-cosmosr

COSMOS (Causal Oriented Search of Multi-Omic Space)

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/cosmosR.html

License:

GPL-3

Recipe:

/bioconductor-cosmosr/meta.yaml

COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets based on prior knowledge of signaling, metabolic, and gene regulatory networks. It estimated the activities of transcrption factors and kinases and finds a network-level causal reasoning. Thereby, COSMOS provides mechanistic hypotheses for experimental observations across mulit-omics datasets.

package bioconductor-cosmosr

Versions:

1.2.0-0,  1.0.0-0

Depends:

• bioconductor-annotationdbi >=1.56.0,<1.57.0

• bioconductor-biomart >=2.50.0,<2.51.0

• bioconductor-carnival >=2.4.0,<2.5.0

• bioconductor-dorothea >=1.6.0,<1.7.0

• bioconductor-gseabase >=1.56.0,<1.57.0

• bioconductor-org.hs.eg.db >=3.14.0,<3.15.0

• r-base >=4.1,<4.2.0a0

• r-dplyr

• r-ggplot2

• r-igraph

• r-magrittr

• r-plyr

• r-purrr

• r-readr

• r-rlang

• r-scales

• r-stringr

• r-tibble

• r-visnetwork

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-cosmosr

and update with:

conda update bioconductor-cosmosr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cosmosr:<tag>

(see bioconductor-cosmosr/tags for valid values for <tag>)

Download stats

Link to this page

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